16S amplicon dataset from Switchgrass (Panicum virgatum)

A phyloseq containing 706 97% sequence similarity OTUs (Operational Taxonomic Units) across 43 samples.

Usage

data("switchgrass")

Format

An object class "phyloseq".

Source

Internal test dataset.

References

Shade A, Stopnisek N (2019) Abundance-occupancy distributions to prioritize plant core microbiome membership. Current Opinion in Microbiology, 49:50-58 doi:10.1016/j.mib.2019.09.008