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Identified core microbiome members for the switchgrass dataset

Source: R/data.R
switchgrass_core.Rd

A phyloseq containing the identified core microbiome members for the switchgrass dataset. This object is used for BRCore function examples. It was generated by running the following on BRCore 2.0.2 (2026-04-30):

switchgrass_core <- identify_core(
  physeq_obj     = switchgrass,
  priority_var   = "sampling_date",
  increase_value = 0.02,
  seed           = 092825
)

Usage

data("switchgrass_core")

Format

An object class "phyloseq".

Source

Internal test dataset.

References

Shade A, Stopnisek N (2019) Abundance-occupancy distributions to prioritize plant core microbiome membership. Current Opinion in Microbiology, 49:50-58 doi:10.1016/j.mib.2019.09.008